SV75_CGATGT_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV75_CGATGT_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61647926
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	589572	0.9563533410677919	TruSeq Adapter, Index 2 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACCGAT	64215	42.880768	31
ACCGATG	64320	42.82826	32
CGTCTGA	65385	42.73031	16
CGATGTA	64275	42.725224	34
TCTCGTA	64570	42.62759	41
CTCGTAT	64595	42.569298	42
ACACGTC	66085	42.42317	13
GTCACCG	65110	42.381172	29
GATCGGA	66960	42.379265	1
CCGATGT	64925	42.34946	33
ACGTCTG	66160	42.27993	15
TATCTCG	65105	42.256565	39
ATCTCGT	65985	41.720295	40
TCACCGA	66085	41.646946	30
ATCGGAA	68175	41.60418	2
TCGTATG	66650	41.31078	43
CGTATGC	66595	41.304356	44
CACGTCT	68185	41.100098	14
CGGAAGA	68875	41.03421	4
GCACACG	68630	40.945065	11