SV74_CTTGTA_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV74_CTTGTA_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66865529
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	1118977	1.6734736369168632	TruSeq Adapter, Index 12 (100% over 51bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	77924	0.11653837360652602	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	123270	43.218113	16
ACACGTC	123815	43.165497	13
ACGTCTG	124085	42.99736	15
GATCGGA	126655	42.9717	1
TCTCGTA	122560	42.7539	41
CTCGTAT	122655	42.726288	42
ATCGGAA	127585	42.64259	2
AATCTCG	123710	42.389194	39
CGGAAGA	127830	42.353046	4
ATCTCGT	124315	42.15575	40
GCACACG	127155	42.136055	11
CACGTCT	126885	42.135284	14
TCGGAAG	129140	42.050686	3
CGTATGC	124735	42.04988	44
TCGTATG	125055	41.998055	43
CACACGT	128215	41.745586	12
GTATGCC	128055	40.99658	45
GTAATCT	133330	39.330738	37
AGTCACC	135475	38.973724	28
CACCTTG	136180	38.709175	31