SV73_CAGATC_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV73_CAGATC_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63390792
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	1105999	1.7447313168133316	TruSeq Adapter, Index 7 (100% over 51bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	110709	0.17464523869649712	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	85849	0.13542818647856616	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	122320	43.720516	1
CGTCTGA	120915	43.645134	16
ACACGTC	121495	43.493225	13
ACGTCTG	121690	43.38111	15
CTCGTAT	120100	43.19851	42
TCTCGTA	120300	43.1323	41
ATCGGAA	123915	43.123245	2
CGGAAGA	124165	42.90946	4
GCACACG	123790	42.746864	11
ATCTCGT	121735	42.66267	40
TCGGAAG	125560	42.533176	3
CACGTCT	124415	42.483295	14
CATCTCG	122220	42.421585	39
CGTATGC	122795	42.2321	44
CACACGT	125365	42.21341	12
TCGTATG	123125	42.197487	43
GTATGCC	125090	41.489655	45
GATCATC	127540	40.67325	36
CCAGATC	129765	39.89436	33
GAACTCC	133595	39.379116	21