SV72_GCCAAT_L003_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV72_GCCAAT_L003_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59371772
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	1425501	2.4009743216018546	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	157175	43.74257	1
CGTCTGA	155090	43.70935	16
ACACGTC	155280	43.682224	13
ACGTCTG	155660	43.57447	15
CGCCAAT	153660	43.420753	33
GTCACGC	154220	43.302475	29
ATCGGAA	158995	43.281494	2
TCTCGTA	154025	43.27112	41
CTCGTAT	154010	43.265102	42
ACGCCAA	154915	43.10095	32
TATCTCG	155145	43.076202	39
GCACACG	157925	43.050194	11
CGGAAGA	159405	43.0487	4
ATCTCGT	155120	42.974365	40
CACGTCT	158025	42.94194	14
CACGCCA	155410	42.911545	31
AGTCACG	155840	42.886986	28
TCACGCC	155450	42.88169	30
TCGGAAG	160570	42.83032	3
CACACGT	158725	42.770847	12