SV71_ACAGTG_L003_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV71_ACAGTG_L003_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35681283
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC	431707	1.2098976373691495	TruSeq Adapter, Index 5 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	48010	43.439564	1
ATCGGAA	48350	43.143402	2
CGTCTGA	48060	42.676334	16
GATCTCG	47320	42.65345	39
TCTCGTA	47435	42.62119	41
CTCGTAT	47490	42.562355	42
ACACGTC	48390	42.500824	13
CGTATGC	47710	42.394386	44
TCGGAAG	49260	42.31441	3
ACGTCTG	48560	42.310516	15
TCGTATG	47860	42.30382	43
CGGAAGA	49685	41.902565	4
ATCTCGT	48610	41.59095	40
CACGTCT	49705	41.385475	14
GCACACG	50405	40.83293	11
CACACGT	50680	40.620243	12
GTATGCC	50255	40.26089	45
AGTGATC	53130	37.77737	36
GTGATCT	53685	37.43712	37
GAACTCC	55170	37.1664	21