SV69_CGATGT_L003_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV69_CGATGT_L003_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46876120
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	419202	0.8942762327598787	TruSeq Adapter, Index 2 (100% over 51bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	56627	0.12080138031901957	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	46230	43.77923	1
ATCGGAA	46975	43.10408	2
ACCGATG	45835	42.59708	32
CACCGAT	45890	42.555836	31
CGATGTA	45755	42.543713	34
CGTCTGA	46775	42.502335	16
CCGATGT	45870	42.43705	33
ACACGTC	47015	42.413494	13
CTCGTAT	46080	42.23389	42
TCTCGTA	46170	42.185673	41
ACGTCTG	47270	42.12313	15
GTCACCG	46380	42.111084	29
TCGGAAG	48220	41.97716	3
TCGTATG	46565	41.86164	43
CGTATGC	46615	41.75882	44
TATCTCG	46735	41.73344	39
CGGAAGA	48570	41.58198	4
TCACCGA	47350	41.167633	30
CACGTCT	48690	40.93144	14
ATCTCGT	47800	40.784775	40