SE324_GTGGCC_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE324_GTGGCC_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20538926
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCATCTCGTATGCC	197957	0.9638137846156124	TruSeq Adapter, Index 20 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	24715	40.582645	11
AGTCACG	24015	40.54764	28
CGTATGC	23620	40.16841	44
GTATGCC	23660	40.157555	45
ACGTCTG	24985	40.144096	15
CGTGGCC	23570	40.119984	33
GTGGCCA	23605	40.01284	34
GTCACGT	24140	39.825073	29
ACACGTC	25200	39.739098	13
CACACGT	25255	39.616917	12
GGCCATC	23985	39.538376	36
CACGTCT	25505	39.219772	14
CTCGTAT	24305	39.02707	42
TGGCCAT	24385	38.732952	35
CAGTCAC	25500	38.69808	27
CGTCTGA	25910	38.634567	16
TCGTATG	24620	38.60998	43
GCCATCT	24815	38.261246	37
CCAGTCA	25835	38.15274	26
TCACGTG	25130	38.121864	30