SE323_CTTGTA_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE323_CTTGTA_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9007119
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCC	257398	2.857717323374988	TruSeq Adapter, Index 12 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	28995	43.081306	45
AGTCACC	29325	42.8727	28
CGTATGC	29135	42.86656	44
GCACACG	29850	42.804558	11
CACACGT	29835	42.70542	12
CTCGTAT	29240	42.651077	42
ACGTCTG	29830	42.637154	15
ACACGTC	29870	42.625256	13
CACGTCT	29900	42.582485	14
CGTCTGA	29935	42.480556	16
TCGTATG	29505	42.45864	43
CAGTCAC	29755	42.44217	27
GTCACCT	29605	42.41402	29
CCTTGTA	29570	42.350094	33
CCAGTCA	29825	42.312386	26
AGCACAC	30395	42.11847	10
ACTCCAG	30130	42.05161	23
TCCAGTC	30190	41.950108	25
GTAATCT	29765	41.906345	37
ACCTTGT	29920	41.877243	32