SE318_GTGAAA_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE318_GTGAAA_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15486341
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG	491551	3.1740938676217967	TruSeq Adapter, Index 19 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	58540	43.34917	11
ACGTCTG	57955	43.316998	15
ACACGTC	58260	43.20994	13
AGTCACG	58045	43.137424	28
CACACGT	58805	43.11556	12
CACGTCT	58340	43.092842	14
TCGTATG	57885	42.945713	45
GTCACGT	58070	42.805027	29
CGTCTGA	58705	42.73404	16
CTCGTAT	57610	42.619583	44
CCAGTCA	58690	42.46401	26
CAGTCAC	58830	42.458565	27
GATCTCG	57950	42.44718	41
ACGATCT	56800	42.439106	39
AGCACAC	59945	42.434486	10
CGATCTC	56800	42.4193	40
ACTCCAG	58840	42.352074	23
TCCAGTC	58905	42.30915	25
CACGTGA	58875	42.246502	31
GAACTCC	59290	42.210087	21