SE300_TAGCTT_L005_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SE300_TAGCTT_L005_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14586632
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC	572384	3.924031263694045	TruSeq Adapter, Index 10 (100% over 51bp)

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACTAGC	63355	43.517384	31
ACTAGCT	63690	43.284954	32
GTATGCC	64850	43.18376	45
TCACTAG	64370	43.01644	30
TAGCTTA	63985	43.015064	34
ACGTCTG	66125	43.0146	15
ACACGTC	66330	43.010555	13
CACGTCT	66205	42.99321	14
CGTATGC	65145	42.97785	44
GCACACG	66380	42.967987	11
CTAGCTT	64140	42.9497	33
CACACGT	66470	42.90304	12
CTCGTAT	65200	42.893288	42
TCGTATG	65555	42.808586	43
CGTCTGA	66410	42.760174	16
GCTTATC	64485	42.681538	36
CCAGTCA	65800	42.673126	26
CAGTCAC	65745	42.66092	27
TATCTCG	65685	42.42586	39
CTTATCT	65135	42.38341	37