FastQCFastQC Report
Thu 22 Jan 2015
foxflaz12hpf2_TTCAGC_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamefoxflaz12hpf2_TTCAGC_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8871429
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTTTG93950.013.3196523
TTGTGTT95650.013.1299811
TGTGTTT98600.012.6914942
TGTTTGA132150.011.019251
GACGGGC14500.08.8444329
CTACCCG7650.08.82393116
ACGGGCG14350.08.62330710
GAGGCTA8000.08.43712312
GTTTGAG83000.08.2163592
AGGCTAC8800.08.18149913
TTTGTGT60500.07.96110342
TGACGGG19000.07.93385558
TTTGAGG32400.07.5022873
GCTACCC9300.07.49974915
TTTGAGC23150.07.2916393
GGCAGGG23600.07.245438629
CGGTACT15900.07.075155745
GGGACGT22050.07.040501633
TTGACGG23250.06.87066037
CAAAGGG23750.06.82082424
Produced by FastQC (version 0.11.2)