FastQCFastQC Report
Thu 22 Jan 2015
foxflaz12hpf1_AAGGGA_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamefoxflaz12hpf1_AAGGGA_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7983433
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTTTG85950.014.3494483
TTGTGTT87250.014.0324661
TGTGTTT90950.013.412112
TGTTTGA115850.010.5668014
TTTGTGT52350.09.9310652
AGGCTAC6150.09.8776413
GAGGCTA6250.09.71953612
TTTGAGG29550.09.5934516
CTACCCG6400.09.49268616
GAGGGGC6650.09.1349029
GCTACCC7050.08.61677215
TGAGGGG11000.07.97689258
CTAAGCG8400.07.767486641
GACGGGC11450.07.27039589
GTTTGAG85800.07.2636395
ACGGGCG11550.07.012652410
TACTAAG9455.456968E-126.904432339
TTTGAGT20550.06.8996853
CTTTGTG77100.06.88903141
TTTGAGC18200.06.6776383
Produced by FastQC (version 0.11.2)