FastQCFastQC Report
Thu 22 Jan 2015
foxfcamras12hpf2_CCTCGG_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamefoxfcamras12hpf2_CCTCGG_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9432510
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTTTG102000.013.7473073
TTGTGTT103000.013.6356921
TGTGTTT106500.013.1241682
ACGGGCG15250.010.76991810
GACGGGC15500.010.7413649
TGTTTGA140150.010.4548471
TGACGGG21300.010.0346778
GAGGCTA8250.09.81765912
AGGCTAC8800.09.45977313
CTACCCG8400.09.10738216
TTGACGG24950.08.6568547
CGGTGTG20350.08.62375615
GGGACGT23800.08.60248333
AGGGACG23500.08.52082332
CAGGGAC24100.08.495398531
TGTGTAC24450.08.37494218
GGGCAGG24000.08.34330628
TTTGTGT63250.08.3269342
GGCAGGG24150.08.29148429
TTTGAGG32100.08.2738333
Produced by FastQC (version 0.11.2)