FastQCFastQC Report
Thu 22 Jan 2015
foxfcamras12hpf1_GGACCC_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamefoxfcamras12hpf1_GGACCC_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9342071
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTTTG101550.015.6479723
TTGTGTT100650.015.5195451
TGTGTTT103200.015.0706382
GAGGCTA8600.011.51106412
TGTTTGA138550.011.4834964
CTACCCG8900.011.12406316
AGGCTAC9450.010.47584413
GCTACCC10200.010.14672515
GACGGGC15000.09.4495369
TGACGGG18550.09.0965888
TTTGTGT57100.09.0661942
ACGGGCG15050.08.82016710
GCGGTGT19050.08.50365614
TTTGAGG31750.08.503526
TTGACGG22050.08.26497
CTAAGCG12150.08.14774941
CGGTGTG19150.08.10678215
GAGGGGC6401.364242E-108.0855429
CAGGGAC22650.08.04596331
AGGGACG22650.08.04596332
Produced by FastQC (version 0.11.2)