FastQCFastQC Report
Fri 20 Mar 2015
L2V18DR-BC11_AGCATG_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameL2V18DR-BC11_AGCATG_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37358379
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTTGTG532850.013.7058351
TTTGTGT665300.011.1105052
TTGTGTT709100.010.7135993
ACTTTGT383450.010.174651
TAACTTT293500.010.0636461
GTGTTTG777950.09.8315945
AACTTTG316100.09.3922252
TGTGTTT830750.09.2504384
TGTTTGA866850.08.76213556
GTTTGAG526400.08.213167
TTTGAGG313750.06.2763038
GTTTGAT352750.05.7038657
GTTTGAC188950.05.69350537
TTGAGGG214600.05.52586849
TTTGAGT285400.05.1018768
Produced by FastQC (version 0.11.2)