Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
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2 | 10 | TAGCTT | N | lane2 | 580 | 91.52 | 12,435,562 | 6.82 | 99.13 | 0.87 | 93.76 | 36.71 | ||
2 | 11 | GGCTAC | N | lane2 | 592 | 91.31 | 12,706,124 | 6.96 | 99.20 | 0.80 | 93.63 | 36.67 | ||
2 | 12 | CTTGTA | N | lane2 | 662 | 91.08 | 14,257,738 | 7.81 | 99.04 | 0.96 | 93.54 | 36.65 | ||
2 | 1 | ATCACG | N | lane2 | 727 | 91.04 | 15,651,387 | 8.58 | 99.19 | 0.81 | 93.43 | 36.62 | ||
2 | 2 | CGATGT | N | lane2 | 970 | 91.44 | 20,808,978 | 11.41 | 99.20 | 0.80 | 93.60 | 36.66 | ||
2 | 3 | TTAGGC | N | lane2 | 683 | 91.11 | 14,690,317 | 8.05 | 99.32 | 0.68 | 93.40 | 36.60 | ||
2 | 4 | TGACCA | N | lane2 | 672 | 91.32 | 14,438,186 | 7.91 | 98.97 | 1.03 | 93.50 | 36.64 | ||
2 | 5 | ACAGTG | N | lane2 | 654 | 91.40 | 14,027,497 | 7.69 | 99.30 | 0.70 | 93.58 | 36.66 | ||
2 | 6 | GCCAAT | N | lane2 | 656 | 91.55 | 14,058,468 | 7.71 | 99.09 | 0.91 | 93.73 | 36.70 | ||
2 | 7 | CAGATC | N | lane2 | 765 | 91.17 | 16,462,111 | 9.02 | 99.07 | 0.93 | 93.54 | 36.65 | ||
2 | 8 | ACTTGA | N | lane2 | 732 | 91.35 | 15,707,713 | 8.61 | 99.32 | 0.68 | 93.69 | 36.69 | ||
2 | 9 | GATCAG | N | lane2 | 629 | 91.29 | 13,519,276 | 7.41 | 99.30 | 0.70 | 93.66 | 36.68 | ||
2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 146 | 77.46 | 3,690,718 | 2.02 | 0.00 | 0.00 | 94.42 | 36.90 |
3 | lane3 | Undetermined | N | lane3 | 5,463 | 46.38 | 230,989,923 | 100.00 | 0.00 | 0.00 | 81.89 | 33.92 | ||
4 | lane4 | Undetermined | N | lane4 | 9,841 | 89.26 | 216,190,337 | 100.00 | 0.00 | 0.00 | 94.10 | 36.75 | ||
5 | lane5 | Undetermined | N | lane5 | 28 | 0.34 | 161,407,008 | 100.00 | 0.00 | 0.00 | 75.45 | 32.12 | ||
6 | L2V18DR-BC1 | AACCAG | N | lane6 | 3,631 | 81.66 | 87,191,100 | 29.82 | 98.20 | 1.80 | 88.74 | 35.23 | ||
6 | L2V18DR-BC2 | TGGTGA | N | lane6 | 1,861 | 82.99 | 43,975,164 | 15.04 | 97.31 | 2.69 | 89.35 | 35.38 | ||
6 | L2V18DR-BC3 | AGTGAG | N | lane6 | 1,692 | 82.52 | 40,215,941 | 13.76 | 98.48 | 1.52 | 89.36 | 35.39 | ||
6 | L2V18DR-BC4 | GCACTA | N | lane6 | 1,664 | 82.56 | 39,526,979 | 13.52 | 98.02 | 1.98 | 89.40 | 35.40 | ||
6 | L2V18DR-BC5 | ACCTCA | N | lane6 | 1,649 | 81.92 | 39,473,106 | 13.50 | 98.28 | 1.72 | 88.95 | 35.28 | ||
6 | L2V18DR-BC6 | GTGCTT | N | lane6 | 1,440 | 82.50 | 34,218,896 | 11.70 | 98.14 | 1.86 | 89.16 | 35.34 | ||
6 | lane6 | unknown | Undetermined | Clusters with unmatched barcodes for lane 6 | N | Undetermined_indices | 247 | 62.54 | 7,744,903 | 2.65 | 0.00 | 0.00 | 90.00 | 35.60 |
7 | L2V11DR-BC7 | AAGCCT | N | lane7 | 1,880 | 88.65 | 41,573,796 | 16.67 | 99.06 | 0.94 | 92.98 | 36.41 | ||
7 | L2V18DR-BC10 | GGAGAA | N | lane7 | 1,928 | 88.32 | 42,805,050 | 17.16 | 98.93 | 1.07 | 92.59 | 36.31 | ||
7 | L2V18DR-BC11 | AGCATG | N | lane7 | 1,699 | 89.16 | 37,358,379 | 14.98 | 98.96 | 1.04 | 93.61 | 36.58 | ||
7 | L2V18DR-BC12 | GAGTCA | N | lane7 | 1,709 | 86.48 | 38,748,502 | 15.54 | 99.04 | 0.96 | 91.27 | 35.94 | ||
7 | L2V18DR-BC8 | GTCGTA | N | lane7 | 2,030 | 88.67 | 44,898,514 | 18.00 | 99.00 | 1.00 | 92.76 | 36.35 | ||
7 | L2V18DR-BC9 | AAGAGG | N | lane7 | 1,675 | 88.13 | 37,265,508 | 14.94 | 98.92 | 1.08 | 92.50 | 36.29 | ||
7 | lane7 | unknown | Undetermined | Clusters with unmatched barcodes for lane 7 | N | Undetermined_indices | 264 | 76.75 | 6,743,403 | 2.70 | 0.00 | 0.00 | 93.42 | 36.57 |
8 | lane8 | Undetermined | N | lane8 | 22 | 0.26 | 165,260,567 | 100.00 | 0.00 | 0.00 | 72.75 | 31.35 |
SampleID | Recipe | Operator | Directory |
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10 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_10 | ||
11 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_11 | ||
12 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_12 | ||
1 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_1 | ||
2 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_2 | ||
3 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_3 | ||
4 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_4 | ||
5 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_5 | ||
6 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_6 | ||
7 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_7 | ||
8 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_8 | ||
9 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane2/Sample_9 | ||
lane2 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 | ||
lane3 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane3/Sample_lane3 | ||
lane4 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane4/Sample_lane4 | ||
lane5 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane5/Sample_lane5 | ||
L2V18DR-BC1 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane6/Sample_L2V18DR-BC1 | ||
L2V18DR-BC2 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane6/Sample_L2V18DR-BC2 | ||
L2V18DR-BC3 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane6/Sample_L2V18DR-BC3 | ||
L2V18DR-BC4 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane6/Sample_L2V18DR-BC4 | ||
L2V18DR-BC5 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane6/Sample_L2V18DR-BC5 | ||
L2V18DR-BC6 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane6/Sample_L2V18DR-BC6 | ||
lane6 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane6 | ||
L2V11DR-BC7 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane7/Sample_L2V11DR-BC7 | ||
L2V18DR-BC10 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane7/Sample_L2V18DR-BC10 | ||
L2V18DR-BC11 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane7/Sample_L2V18DR-BC11 | ||
L2V18DR-BC12 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane7/Sample_L2V18DR-BC12 | ||
L2V18DR-BC8 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane7/Sample_L2V18DR-BC8 | ||
L2V18DR-BC9 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane7/Sample_L2V18DR-BC9 | ||
lane7 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane7 | ||
lane8 | /export/data1/gencore/demux/C572CACXX/bcl2fastq/Unaligned/Project_lane8/Sample_lane8 |
bcl2fastq-1.8.4