C5726ACXX l06n01 ah7609b-042415.341000000090f5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C5726ACXX l06n01 ah7609b-042415.341000000090f5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10139033
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	77653	0.7658817167278181	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	62548	0.6169030123484163	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG	44732	0.44118605788145676	TruSeq Adapter, Index 19 (97% over 40bp)
TCTTCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	15116	0.14908719598801976	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCGGTC	9100	41.796658	38
CTCGGGG	7320	41.63562	16
CTGACCC	8655	41.13806	40
CCTCGGG	7405	41.127316	15
TCGGGGA	9275	41.104805	17
CAGGCGG	9315	40.87505	36
TAAGCCG	8755	40.797276	16
GCGGTCT	9415	40.541763	39
CCTGACC	8800	40.48341	39
CCAGGGA	8810	40.47078	5
CCCAGGC	9410	40.39977	34
CCCTGAC	8845	40.226524	38
CGGTCTC	9485	40.19746	40
CCAGGCG	9465	40.1006	35
GCACACG	6370	40.07899	11
TCCAGGG	8925	39.923515	4
GTCTCCC	9570	39.884933	42
AGGCGGT	9590	39.70685	37
AGTCACG	5900	39.501457	28
GGTCTCC	9725	39.273746	41