FastQCFastQC Report
Wed 29 Apr 2015
C5726ACXX l04n01 foxflacz18hpf1.34100000008eb6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC5726ACXX l04n01 foxflacz18hpf1.34100000008eb6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43855701
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGTGT738850.016.0863592
TAACTTT387650.014.3060161
CTTTGTG858450.013.9589891
AACTTTG397800.013.8532772
TTGTGTT937000.013.1284693
TGTGTTT1016850.012.1328834
GTGTTTG1053150.011.6911545
TGTTTGA1174200.010.5048716
CACGGTA102250.010.16680345
TTTGAGG214850.09.2550978
CTCACGG112900.09.21479743
ACTTTGT626250.08.92174153
TCACGGT118250.08.87207844
CGGTACT68450.08.74407645
TGACGGG106200.08.64170110
CCTCACG124200.08.37657542
CCCTCAC127300.08.26131241
GAGGGGC47250.08.18823411
TGAGGGG67950.08.11036110
CTACCCG57200.08.02171118
Produced by FastQC (version 0.11.2)