FastQCFastQC Report
Wed 29 Apr 2015
C5726ACXX l03n01 foxfcamras20hpf1.34100000008e9d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC5726ACXX l03n01 foxfcamras20hpf1.34100000008e9d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26749309
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACTTT240200.018.4647581
AACTTTG269550.016.356262
TTTGTGT546550.016.1168462
CTTTGTG597000.014.8282251
TTGTGTT698900.013.2247783
TGTGTTT768500.012.0562884
CACGGTA75700.011.65356645
GTGTTTG804400.011.4986475
ACTTTGT415750.010.7019113
CTCACGG82550.010.66617443
TGTTTGA884250.010.4548896
CGGTACT44000.010.433887545
TCACGGT86350.010.22261844
CCTCACG89900.09.84428742
TTTGAGG158000.09.5239628
CCCTCAC92550.09.44094941
AAAGTGC99400.09.00706923
TGACGGG91600.08.91373510
ACGGTAC53150.08.85485544
AAGTGCT103900.08.7471324
Produced by FastQC (version 0.11.2)