Hyb_T1_CGATGT_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	Hyb_T1_CGATGT_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14526305
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGCCTTTTGGTAACGACTGATCGATAGATACGACCTTTAAAACGCCGTCT	51956	0.3576683816015153	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	33171	0.2283512565652449	TruSeq Adapter, Index 2 (100% over 51bp)
GCCTTTTGGTAACGACTGATCGATAGATACGACCTTTAAAACGCCGTCTGC	28983	0.1995208003687104	No Hit
GCCGTCTGCTTCTCCTGCAAGGATCATACCTTGAGAAAGCTCTCCTCTGAG	21735	0.1496251111345934	No Hit
GTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGAT	17115	0.11782073968569433	No Hit
GCCGGTCATTGGGAATTTCCTTCACTACTTCCTTCGGTTTCTTCGCATTTT	15820	0.10890587799168475	No Hit
GCTGAGTCAACAGCAGAGAGATGCTCCACAGGAGTTTGCTCTGCAATAGCA	15624	0.107556601627186	No Hit
CTTTTCGATACGAGTAATTGTAATATCAGCCTTTCCTTTCGTCAGCTTTGC	14996	0.10323341001032264	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	4720	35.713196	39
GAACTCC	5180	33.788803	21
TCGCCCG	6440	33.2602	2
GTATGCC	5145	33.203865	45
GTGCCTT	9310	32.971268	1
CTCGCCC	6620	32.533062	1
CGTATGC	5375	31.448378	44
CCGATGT	5390	31.220314	33
TCTCGTA	5470	30.900816	41
CGTCTGA	5715	30.749638	16
CAGTCAC	5650	30.699646	27
ATCTCGT	5515	30.565372	40
CGCCCGG	7005	30.544266	3
ACTCCAG	5915	30.236767	23
ACACGTC	5805	29.575186	13
ACGTCTG	6110	28.651249	15
GCACACG	6205	27.741173	11
AACTCCA	6495	27.190266	22
TCGTATG	6295	27.138311	43
CTCGTAT	6355	26.739681	42