MK217_ATCACG_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK217_ATCACG_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14470808
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC	955150	6.600529839107809	TruSeq Adapter, Index 1 (100% over 51bp)
GGCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGGA	45100	0.31166193345941706	No Hit
GTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTC	25224	0.17430954788426467	No Hit
GCATCGTTTACGGTCAGAACTAGGGCGGTATCTAATCGCCTTCGAACCTCT	22300	0.1541033506905765	No Hit
GCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGGAA	21952	0.1516985091641047	No Hit
CAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGAT	20213	0.13968121199590236	No Hit
GCCCCAGTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGC	17392	0.12018679261033662	No Hit
GGCATCGTTTACGGTCAGAACTAGGGCGGTATCTAATCGCCTTCGAACCTC	16753	0.11577100601431517	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCAC	16439	0.11360112026916536	No Hit
GTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCG	16084	0.11114790549359788	No Hit
CCCGGTTCAAACCAATGCGATAAAAATGGTTTCCGCAACAACGAAGTCGTT	15353	0.10609635619517584	No Hit
CTAAGAAGTTATACGAACCCGAAGATTCGCCAACTATTTAGCAGGCTAGAG	15303	0.10575083298734944	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGTCTG	114035	43.912434	15
GTATGCC	109545	43.86128	45
CACACGT	115150	43.85651	12
CGTCTGA	114505	43.69682	16
GTCTGAA	114425	43.690773	17
CACGTCT	114720	43.68945	14
GCACACG	116065	43.596058	11
CTGAACT	114665	43.441757	19
TCTGAAC	115010	43.40338	18
GTCACAT	112800	43.29799	29
ACATCAC	111575	43.26385	32
ACACGTC	116925	42.984848	13
CTCGTAT	112210	42.8305	42
TCACATC	113645	42.762234	30
CACATCA	113915	42.708282	31
CGTATGC	112590	42.641064	44
TCTCGTA	113410	42.43111	41
CATCACG	113290	42.40231	33
GAGCACA	120145	42.36476	9
TCGTATG	113635	42.355743	43