MK205_CGATGT_L008_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK205_CGATGT_L008_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11284071
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	625021	5.538967275197045	TruSeq Adapter, Index 2 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACACGT	74165	43.955494	12
GCACACG	74675	43.688435	11
AGCACAC	75000	43.531345	10
GATCGGA	77010	43.4305	1
ACACGTC	74690	43.41459	13
TCGGAAG	76915	43.39225	3
CGTCTGA	75640	43.37477	16
CACGTCT	74720	43.34898	14
AGAGCAC	76245	43.286545	8
ACGTCTG	75460	43.153454	15
AGTCACC	73430	43.13563	28
GTATGCC	72645	42.941475	45
TCTGAAC	76180	42.92184	18
GTCTGAA	76550	42.90029	17
ATCGGAA	77990	42.831	2
CTCGTAT	72725	42.76022	42
GAGCACA	76695	42.718884	9
TATCTCG	72800	42.689545	39
CAGTCAC	75450	42.68737	27
GTATCTC	72960	42.61003	38