LW252_GAGTGG_L008_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW252_GAGTGG_L008_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5920014
Sequences flagged as poor quality	0
Sequence length	51
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATGCC	311646	5.264278091234244	TruSeq Adapter, Index 7 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGAGTG	34975	43.392048	32
CACGAGT	34995	43.36265	31
GTATGCC	35635	43.095074	45
AGTCACG	36775	43.03819	28
TCACGAG	36180	42.97479	30
CACACGT	37980	42.691505	12
ACTCCAG	38110	42.603474	23
CTCGTAT	36040	42.60347	42
CAGTCAC	37765	42.600742	27
GAGTGGA	35115	42.597805	34
CGAGTGG	35500	42.561855	33
CACGTCT	37890	42.5554	14
CGTCTGA	38290	42.533173	16
CTCCAGT	38185	42.505352	24
CCAGTCA	38170	42.467056	26
TCGTATG	36275	42.45264	43
ACGTCTG	38145	42.41837	15
GTCACGA	36805	42.397858	29
CGTATGC	36235	42.381485	44
ACACGTC	38070	42.377834	13