LW245_CCGTCC_L008_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW245_CCGTCC_L008_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5972442
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	138710	2.3225005784903394	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCCG	18925	43.51149	35
CCGTCCC	18935	43.49675	34
GTCCCGA	17410	43.336285	36
CCCGTCC	19120	43.195717	33
CACCCGT	19590	43.162495	31
ACCCGTC	19285	43.074738	32
GTCACCC	20170	43.07032	29
TCACCCG	19975	43.051483	30
GCACACG	21085	42.766327	11
CGTCTGA	21200	42.671944	16
ACGTCTG	21055	42.645607	15
AGTCACC	20490	42.57337	28
CACGTCT	21030	42.535835	14
CCCGATC	17530	42.336834	38
ACACGTC	21130	42.313236	13
CACACGT	21340	42.20258	12
CCAGTCA	21245	42.16185	26
ACTCCAG	21330	42.05149	23
CCGATCT	17525	41.991486	39
CAGTCAC	21160	41.969685	27