Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
---|
2 | series_92V1_200 | Undetermined | N | lane2 | 4,785 | 100.00 | 93,825,955 | 100.00 | 0.00 | 0.00 | 95.71 | 37.27 | ||
3 | series_92V5_200 | Undetermined | N | lane3 | 4,327 | 100.00 | 84,833,866 | 100.00 | 0.00 | 0.00 | 97.12 | 37.70 | ||
4 | Hyb_T10 | GATCAG | N | lane4 | 541 | 100.00 | 10,598,840 | 6.02 | 98.73 | 1.27 | 94.29 | 36.76 | ||
4 | Hyb_T11 | TAGCTT | N | lane4 | 600 | 100.00 | 11,768,655 | 6.68 | 99.06 | 0.94 | 94.22 | 36.74 | ||
4 | Hyb_T12 | GGCTAC | N | lane4 | 494 | 100.00 | 9,693,040 | 5.51 | 97.49 | 2.51 | 94.07 | 36.70 | ||
4 | Hyb_T1 | CGATGT | N | lane4 | 741 | 100.00 | 14,526,305 | 8.25 | 98.88 | 1.12 | 94.38 | 36.79 | ||
4 | Hyb_T2 | TGACCA | N | lane4 | 744 | 100.00 | 14,597,387 | 8.29 | 98.41 | 1.59 | 94.60 | 36.85 | ||
4 | Hyb_T3 | ACAGTG | N | lane4 | 678 | 100.00 | 13,286,794 | 7.55 | 98.98 | 1.02 | 94.65 | 36.86 | ||
4 | Hyb_T4 | GCCAAT | N | lane4 | 747 | 100.00 | 14,638,818 | 8.31 | 98.69 | 1.31 | 94.68 | 36.87 | ||
4 | Hyb_T5 | CAGATC | N | lane4 | 693 | 100.00 | 13,586,413 | 7.72 | 98.83 | 1.17 | 94.70 | 36.87 | ||
4 | Hyb_T6 | CTTGTA | N | lane4 | 954 | 100.00 | 18,698,171 | 10.62 | 98.90 | 1.10 | 94.68 | 36.87 | ||
4 | Hyb_T7 | ATCACG | N | lane4 | 945 | 100.00 | 18,521,149 | 10.52 | 98.99 | 1.01 | 94.72 | 36.88 | ||
4 | Hyb_T8 | TTAGGC | N | lane4 | 979 | 100.00 | 19,199,418 | 10.90 | 95.57 | 4.43 | 94.58 | 36.83 | ||
4 | Hyb_T9 | ACTTGA | N | lane4 | 635 | 100.00 | 12,457,123 | 7.08 | 98.62 | 1.38 | 94.83 | 36.91 | ||
4 | lane4 | unknown | Undetermined | Clusters with unmatched barcodes for lane 4 | N | Undetermined_indices | 229 | 100.00 | 4,493,015 | 2.55 | 0.00 | 0.00 | 94.54 | 36.85 |
5 | handrdnfgfr12hpf1 | GGACCC | N | lane5 | 1,382 | 100.00 | 27,089,652 | 16.92 | 95.64 | 4.36 | 94.01 | 36.64 | ||
5 | handrdnfgfr12hpf2 | CCTCGG | N | lane5 | 1,248 | 100.00 | 24,468,524 | 15.28 | 97.95 | 2.05 | 94.08 | 36.67 | ||
5 | handrlaz12hpf1 | AAGGGA | N | lane5 | 1,252 | 100.00 | 24,544,920 | 15.33 | 97.38 | 2.62 | 94.10 | 36.67 | ||
5 | handrlaz12hpf2 | TTCAGC | N | lane5 | 1,358 | 100.00 | 26,633,672 | 16.63 | 98.51 | 1.49 | 94.12 | 36.68 | ||
5 | handrnoggin12hpf1 | CCTTCA | N | lane5 | 1,332 | 100.00 | 26,120,948 | 16.31 | 98.22 | 1.78 | 93.98 | 36.63 | ||
5 | handrnoggin12hpf2 | AAGACG | N | lane5 | 1,328 | 100.00 | 26,047,335 | 16.26 | 98.16 | 1.84 | 94.17 | 36.71 | ||
5 | lane5 | unknown | Undetermined | Clusters with unmatched barcodes for lane 5 | N | Undetermined_indices | 267 | 100.00 | 5,240,084 | 3.27 | 0.00 | 0.00 | 92.72 | 36.35 |
6 | LA2 | CGATGT | N | lane6 | 783 | 100.00 | 15,349,612 | 10.54 | 97.27 | 2.73 | 96.80 | 37.56 | ||
6 | LA3 | ACAGTG | N | lane6 | 983 | 100.00 | 19,270,284 | 13.24 | 98.74 | 1.26 | 96.66 | 37.51 | ||
6 | LM2 | TGACCA | N | lane6 | 918 | 100.00 | 17,990,949 | 12.36 | 98.55 | 1.45 | 96.90 | 37.59 | ||
6 | LM3 | GCCAAT | N | lane6 | 775 | 100.00 | 15,201,960 | 10.44 | 97.60 | 2.40 | 96.86 | 37.57 | ||
6 | PA2 | CAGATC | N | lane6 | 1,046 | 100.00 | 20,506,376 | 14.08 | 98.13 | 1.87 | 96.88 | 37.59 | ||
6 | PA3 | CTTGTA | N | lane6 | 1,078 | 100.00 | 21,144,206 | 14.52 | 98.45 | 1.55 | 96.82 | 37.57 | ||
6 | PM2 | CCGTCC | N | lane6 | 778 | 100.00 | 15,246,486 | 10.47 | 98.53 | 1.47 | 96.78 | 37.55 | ||
6 | PM3 | GTGAAA | N | lane6 | 835 | 100.00 | 16,371,061 | 11.24 | 98.07 | 1.93 | 96.77 | 37.55 | ||
6 | lane6 | unknown | Undetermined | Clusters with unmatched barcodes for lane 6 | N | Undetermined_indices | 230 | 100.00 | 4,512,823 | 3.10 | 0.00 | 0.00 | 97.05 | 37.63 |
7 | MK207 | TGACCA | N | lane7 | 143 | 100.00 | 2,804,948 | 1.53 | 96.74 | 3.26 | 91.62 | 35.95 | ||
7 | MK208 | GGCTAC | N | lane7 | 655 | 100.00 | 12,835,147 | 6.99 | 95.94 | 4.06 | 92.20 | 36.10 | ||
7 | MK209 | CTTGTA | N | lane7 | 528 | 100.00 | 10,358,237 | 5.64 | 98.12 | 1.88 | 92.28 | 36.14 | ||
7 | MK210 | AGTCAA | N | lane7 | 831 | 100.00 | 16,287,046 | 8.87 | 98.02 | 1.98 | 90.46 | 35.61 | ||
7 | MK211 | AGTTCC | N | lane7 | 478 | 100.00 | 9,381,554 | 5.11 | 97.85 | 2.15 | 89.67 | 35.40 | ||
7 | MK212 | ATGTCA | N | lane7 | 1,034 | 100.00 | 20,265,859 | 11.04 | 97.98 | 2.02 | 92.04 | 36.08 | ||
7 | MK213 | CCGTCC | N | lane7 | 988 | 100.00 | 19,371,445 | 10.55 | 97.78 | 2.22 | 91.66 | 35.97 | ||
7 | MK214 | GTAGAG | N | lane7 | 908 | 100.00 | 17,803,843 | 9.70 | 95.94 | 4.06 | 92.40 | 36.17 | ||
7 | MK215 | GTCCGC | N | lane7 | 987 | 100.00 | 19,350,652 | 10.54 | 95.95 | 4.05 | 92.08 | 36.08 | ||
7 | MK216 | GTGAAA | N | lane7 | 894 | 100.00 | 17,536,594 | 9.56 | 97.75 | 2.25 | 92.12 | 36.10 | ||
7 | MK217 | ATCACG | N | lane7 | 738 | 100.00 | 14,470,808 | 7.88 | 98.27 | 1.73 | 92.00 | 36.06 | ||
7 | MK218 | CGATGT | N | lane7 | 532 | 100.00 | 10,430,471 | 5.68 | 98.23 | 1.77 | 92.23 | 36.14 | ||
7 | MK219 | ACAGTG | N | lane7 | 33 | 100.00 | 653,545 | 0.36 | 94.01 | 5.99 | 92.09 | 36.07 | ||
7 | MK221 | CAGATC | N | lane7 | 157 | 100.00 | 3,081,337 | 1.68 | 96.64 | 3.36 | 91.84 | 35.99 | ||
7 | MK222 | GTGGCC | N | lane7 | 208 | 100.00 | 4,078,241 | 2.22 | 96.28 | 3.72 | 91.84 | 36.00 | ||
7 | lane7 | unknown | Undetermined | Clusters with unmatched barcodes for lane 7 | N | Undetermined_indices | 246 | 100.00 | 4,819,665 | 2.63 | 0.00 | 0.00 | 91.51 | 35.93 |
8 | LW245 | CCGTCC | N | lane8 | 305 | 100.00 | 5,972,442 | 3.85 | 97.84 | 2.16 | 93.49 | 36.53 | ||
8 | LW246 | GTAGAG | N | lane8 | 251 | 100.00 | 4,925,522 | 3.18 | 98.49 | 1.51 | 93.94 | 36.66 | ||
8 | LW247 | GTCCGC | N | lane8 | 402 | 100.00 | 7,881,938 | 5.09 | 96.34 | 3.66 | 92.52 | 36.27 | ||
8 | LW248 | GTGAAA | N | lane8 | 316 | 100.00 | 6,203,332 | 4.00 | 97.70 | 2.30 | 92.59 | 36.27 | ||
8 | LW249 | GTGGCC | N | lane8 | 250 | 100.00 | 4,907,245 | 3.17 | 97.99 | 2.01 | 92.46 | 36.23 | ||
8 | LW250 | GTTTCG | N | lane8 | 225 | 100.00 | 4,416,368 | 2.85 | 98.31 | 1.69 | 93.17 | 36.43 | ||
8 | LW251 | CGTACG | N | lane8 | 609 | 100.00 | 11,945,116 | 7.71 | 98.22 | 1.78 | 90.43 | 35.65 | ||
8 | LW252 | GAGTGG | N | lane8 | 302 | 100.00 | 5,920,014 | 3.82 | 97.89 | 2.11 | 90.76 | 35.74 | ||
8 | LW253 | GGTAGC | N | lane8 | 216 | 100.00 | 4,228,232 | 2.73 | 97.15 | 2.85 | 90.48 | 35.66 | ||
8 | LW254 | TGACCA | N | lane8 | 345 | 100.00 | 6,761,741 | 4.36 | 97.27 | 2.73 | 93.74 | 36.59 | ||
8 | LW255 | ACAGTG | N | lane8 | 260 | 100.00 | 5,093,036 | 3.29 | 97.99 | 2.01 | 93.68 | 36.57 | ||
8 | LW256 | GCCAAT | N | lane8 | 323 | 100.00 | 6,324,593 | 4.08 | 97.28 | 2.72 | 91.50 | 35.97 | ||
8 | LW259 | GATCAG | N | lane8 | 372 | 100.00 | 7,293,418 | 4.71 | 98.13 | 1.87 | 93.83 | 36.63 | ||
8 | LW260 | TAGCTT | N | lane8 | 459 | 100.00 | 8,998,757 | 5.81 | 98.56 | 1.44 | 93.86 | 36.64 | ||
8 | LW261 | GGCTAC | N | lane8 | 324 | 100.00 | 6,347,799 | 4.10 | 97.67 | 2.33 | 93.57 | 36.56 | ||
8 | MK204 | ATCACG | N | lane8 | 774 | 100.00 | 15,171,247 | 9.79 | 98.39 | 1.61 | 92.38 | 36.19 | ||
8 | MK205 | CGATGT | N | lane8 | 575 | 100.00 | 11,284,071 | 7.28 | 98.44 | 1.56 | 92.40 | 36.21 | ||
8 | MK206 | TTAGGC | N | lane8 | 1,098 | 100.00 | 21,523,506 | 13.89 | 98.80 | 1.20 | 92.58 | 36.24 | ||
8 | MK220 | ACTTGA | N | lane8 | 244 | 100.00 | 4,791,731 | 3.09 | 98.06 | 1.94 | 92.47 | 36.21 | ||
8 | lane8 | unknown | Undetermined | Clusters with unmatched barcodes for lane 8 | N | Undetermined_indices | 254 | 100.00 | 4,982,339 | 3.21 | 0.00 | 0.00 | 92.77 | 36.32 |
SampleID | Recipe | Operator | Directory |
---|
series_92V1_200 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_series_92V1_200 | ||
series_92V5_200 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane3/Sample_series_92V5_200 | ||
Hyb_T10 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T10 | ||
Hyb_T11 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T11 | ||
Hyb_T12 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T12 | ||
Hyb_T1 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T1 | ||
Hyb_T2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T2 | ||
Hyb_T3 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T3 | ||
Hyb_T4 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T4 | ||
Hyb_T5 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T5 | ||
Hyb_T6 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T6 | ||
Hyb_T7 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T7 | ||
Hyb_T8 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T8 | ||
Hyb_T9 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_Hyb_T9 | ||
lane4 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane4 | ||
handrdnfgfr12hpf1 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_handrdnfgfr12hpf1 | ||
handrdnfgfr12hpf2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_handrdnfgfr12hpf2 | ||
handrlaz12hpf1 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_handrlaz12hpf1 | ||
handrlaz12hpf2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_handrlaz12hpf2 | ||
handrnoggin12hpf1 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_handrnoggin12hpf1 | ||
handrnoggin12hpf2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_handrnoggin12hpf2 | ||
lane5 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane5 | ||
LA2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_LA2 | ||
LA3 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_LA3 | ||
LM2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_LM2 | ||
LM3 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_LM3 | ||
PA2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_PA2 | ||
PA3 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_PA3 | ||
PM2 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_PM2 | ||
PM3 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_PM3 | ||
lane6 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane6 | ||
MK207 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK207 | ||
MK208 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK208 | ||
MK209 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK209 | ||
MK210 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK210 | ||
MK211 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK211 | ||
MK212 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK212 | ||
MK213 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK213 | ||
MK214 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK214 | ||
MK215 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK215 | ||
MK216 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK216 | ||
MK217 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK217 | ||
MK218 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK218 | ||
MK219 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK219 | ||
MK221 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK221 | ||
MK222 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_MK222 | ||
lane7 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane7 | ||
LW245 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW245 | ||
LW246 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW246 | ||
LW247 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW247 | ||
LW248 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW248 | ||
LW249 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW249 | ||
LW250 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW250 | ||
LW251 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW251 | ||
LW252 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW252 | ||
LW253 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW253 | ||
LW254 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW254 | ||
LW255 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW255 | ||
LW256 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW256 | ||
LW259 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW259 | ||
LW260 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW260 | ||
LW261 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_LW261 | ||
MK204 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_MK204 | ||
MK205 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_MK205 | ||
MK206 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_MK206 | ||
MK220 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_MK220 | ||
lane8 | /export/data1/gencore/demux/C56P1ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane8 |
bcl2fastq-1.8.4