C55MVACXX l08n01 2-3h gd7 8wg16 rep2_150303.34100000007b86.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C55MVACXX l08n01 2-3h gd7 8wg16 rep2_150303.34100000007b86.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48413980
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	1313310	2.7126668784512242	TruSeq Adapter, Index 2 (100% over 51bp)
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA	187075	0.38640698409839475	No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA	177899	0.36745378091204234	No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA	154874	0.31989520382335845	No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT	152185	0.31434102298550953	No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT	139225	0.2875718955557878	No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC	135136	0.2791259879894196	No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG	131852	0.27234282329195	No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC	123382	0.25484787658440805	No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG	121665	0.2513013803037883	No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT	116694	0.2410336848984529	No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA	54008	0.11155455510990833	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	146985	43.025425	13
CACGTCT	147030	42.93733	14
ACGTCTG	147335	42.810455	15
CGTCTGA	147450	42.77096	16
TCGGAAG	150045	42.647217	3
CGGAAGA	150450	42.469612	4
GATCGGA	152025	42.31232	1
CGATGTA	147050	42.22293	34
CACACGT	150185	42.15212	12
GTCACCG	147990	42.110096	29
TATCTCG	146835	42.044544	39
CCGATGT	148015	42.002377	33
AGTCACC	148625	41.92987	28
TCTGAAC	150680	41.79944	18
ACCGATG	149185	41.76212	32
TCTCGTA	147555	41.761795	41
CTCGTAT	148075	41.633373	42
GTATCTC	148465	41.57969	38
TCGTATG	148785	41.504528	43
GTATGCC	148645	41.493984	45