C55MVACXX l08n01 2-3h db 8wg16 rep2_150303.34100000007bd6.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C55MVACXX l08n01 2-3h db 8wg16 rep2_150303.34100000007bd6.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49798616
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC	460465	0.9246542112736628	TruSeq Adapter, Index 4 (100% over 51bp)
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA	144086	0.28933735829124246	No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA	136612	0.27432890906044455	No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT	129023	0.25908952971705074	No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC	122452	0.2458943838921146	No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA	117025	0.2349964906655237	No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT	113843	0.2286067548543919	No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC	109343	0.21957035914411757	No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT	100452	0.20171644930855104	No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG	97944	0.19668016476602482	No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG	88869	0.17845676675030486	No Hit
AAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGACA	51504	0.10342456103599346	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACGTCT	55290	40.169456	14
ACACGTC	55395	40.158257	13
CGTCTGA	55955	39.748547	16
ACGTCTG	56020	39.69841	15
TCGGAAG	57800	38.88818	3
TCTCGTA	56445	38.524303	41
CACACGT	58070	38.44007	12
CGGAAGA	58700	38.207626	4
TCGTATG	57025	38.206173	43
CTCGTAT	57095	38.109367	42
ACTGACC	57955	37.855183	32
GTATGCC	57590	37.84977	45
ATCTCGT	57700	37.76051	40
GTCACTG	58445	37.74995	29
AATCTCG	57785	37.69706	39
GATCGGA	60125	37.58764	1
TCTGAAC	59370	37.56119	18
CGTATGC	58105	37.41472	44
CAGTCAC	59115	37.2536	27
AGTCACT	59640	36.980675	28