C55MVACXX l07n01 2-3h db 8wg16 rep1_150303.34100000007be3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C55MVACXX l07n01 2-3h db 8wg16 rep1_150303.34100000007be3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46450288
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCC	1445609	3.1121636963800956	TruSeq Adapter, Index 3 (100% over 51bp)
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA	170773	0.36764680554833157	No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA	156524	0.3369710000506348	No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA	135646	0.2920240236185403	No Hit
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT	119959	0.2582524353777957	No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG	113999	0.2454215138558452	No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC	112970	0.24320624233804536	No Hit
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT	110820	0.2385776380977444	No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG	105421	0.2269544593566352	No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT	100490	0.21633880935248453	No Hit
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC	98886	0.2128856553053019	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACGTCT	156990	43.26992	14
ACACGTC	157490	43.23253	13
CGTCTGA	157125	43.231308	16
ACGTCTG	157455	43.15785	15
CTTAGGC	155810	43.06773	33
ACTTAGG	156705	42.97885	32
TCGGAAG	159460	42.886047	3
TCTCGTA	156645	42.83466	41
CACACGT	159425	42.728966	12
TAGGCAT	157315	42.66863	35
CGGAAGA	160205	42.633255	4
GTATGCC	157630	42.63074	45
TCGTATG	157910	42.55754	43
GATCGGA	161195	42.542606	1
CACTTAG	158550	42.47188	31
ATCTCGT	158060	42.45183	40
CTCGTAT	158230	42.402737	42
CGTATGC	158360	42.367447	44
TCTGAAC	160400	42.330395	18
AGGCATC	158595	42.253616	36