C55MVACXX l05n01 k15.34100000008304.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	C55MVACXX l05n01 k15.34100000008304.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24554146
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC	153901	0.6267821328422499	TruSeq Adapter, Index 5 (100% over 51bp)
GGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACG	104127	0.4240709491586472	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGG	85017	0.34624295220855983	No Hit
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATG	47486	0.1933930017358372	No Hit
CGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGAC	47243	0.19240335216708412	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGAT	41386	0.16854994671775592	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGA	40275	0.164025252598889	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTCT	34764	0.14158097781124213	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTGA	31803	0.12952191454754727	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTGG	30535	0.12435781720936254	No Hit
CAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCC	29723	0.1210508400495786	No Hit
CTCGAAGTTCATCACGCGCTCCCACTTGAAGCCCTCGGGGAAGGACAGCTT	29586	0.1204928894696643	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAACT	29375	0.1196335641239569	No Hit
CGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGACTCC	28783	0.11722256599761198	No Hit
CCGACATCAAGCTGGACATCACCTCCCACAACGAGGACTACACCATCGTGG	28586	0.11642025749948705	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGAC	28423	0.11575641848834817	No Hit
AGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCT	26391	0.10748083032494798	No Hit
AGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGAT	25718	0.10473994900901869	No Hit
TCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGA	24827	0.10111123392359074	No Hit
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCTT	24712	0.10064288124702037	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	18185	40.648315	11
GTATGCC	18015	40.466976	45
CGTATGC	18025	40.457005	44
ACGTCTG	18510	39.776703	15
AGCACAC	19035	38.904087	10
ACACGTC	19215	38.422577	13
CTCGTAT	18930	38.41791	42
CACACGT	19265	38.252796	12
CACGTCT	19390	37.983067	14
TCGTATG	19220	37.918728	43
CGTCTGA	19760	37.36277	16
CACAGTG	19465	37.294613	33
GAGCACA	20110	36.958664	9
ACACAGT	19675	36.909565	32
AGAGCAC	20150	36.851654	8
CACACAG	20035	36.49858	31
GTCACAC	20155	36.194374	29
CTGAACT	20720	35.784252	19
TCTCGTA	20380	35.66065	41
CAGTCAC	20545	35.608593	27

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content