FastQCFastQC Report
Thu 9 Apr 2015
C55MVACXX l03n01 eb-nil-12hr dox.34100000007e0c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC55MVACXX l03n01 eb-nil-12hr dox.34100000007e0c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49435543
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACACT160600.013.223981
CCGATCG20850.010.57382719
AATCCGA74500.010.26968224
TCGAATG76400.010.1878012
CGCATCG23550.010.12571838
CGCATAT18350.09.9518941
ACTGTAG244300.09.8895655
TGTAGCT276100.09.866777
GTCGCAT20350.09.52776051
TACACTG220950.09.2853562
CGGCTAT34850.09.05695151
CTCGAAT139850.08.9310831
ACACTGT244550.08.8768193
ATCCGAA88650.08.73348225
AAATCCG82950.08.73346123
GTCGAAT79550.08.7290561
TCGTATG68400.08.71576543
ACACGTC56300.08.7110413
TTACGGC36400.08.6524240
ACGTCTG58300.08.60512715
Produced by FastQC (version 0.11.2)