SV47_TGACCA_L008_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV47_TGACCA_L008_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25612425
Sequences flagged as poor quality	0
Sequence length	51
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC	772661	3.0167428503939004	TruSeq Adapter, Index 4 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	90375	43.146248	2
GATCGGA	90970	42.905987	1
ACACGTC	88440	42.76524	13
CTCGTAT	86160	42.672516	42
TCGTATG	86225	42.616253	43
CGTCTGA	88615	42.602406	16
CGTATGC	86190	42.51367	44
TCTCGTA	86730	42.46991	41
ACGTCTG	89150	42.40227	15
GTATGCC	86500	42.316105	45
AATCTCG	87905	42.299026	39
ATCTCGT	87520	42.26911	40
CACACGT	89910	42.184265	12
CACGTCT	89785	42.08985	14
TCGGAAG	93035	41.875626	3
GACCAAT	89090	41.652973	35
ACCAATC	89160	41.53225	36
CGGAAGA	93785	41.486588	4
GCACACG	92260	41.28015	11
CCAATCT	90505	41.01698	37