SV29_GCCAAT_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SV29_GCCAAT_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27909651
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	685330	2.455530525981855	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	76625	44.115578	1
ATCGGAA	77120	43.94607	2
ACACGTC	76775	43.53243	13
TCGGAAG	77830	43.477207	3
CGTCTGA	76740	43.470192	16
CGCCAAT	75345	43.35904	33
ACGTCTG	77195	43.275173	15
TCTCGTA	75830	43.245907	41
CGGAAGA	78305	43.172707	4
CTCGTAT	75990	43.17262	42
GTCACGC	76285	43.145813	29
TATCTCG	76180	43.124325	39
ACGCCAA	75800	43.098698	32
TCGTATG	76345	43.046436	43
CGTATGC	76355	43.004517	44
ATCTCGT	76700	42.796444	40
CACGTCT	78315	42.71375	14
AGTCACG	77040	42.707993	28
TCACGCC	76850	42.68808	30
CACGCCA	76950	42.54163	31