FastQCFastQC Report
Wed 17 Sep 2014
handrnoggin15hpf1_CCTTCA_L006_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamehandrnoggin15hpf1_CCTTCA_L006_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32127921
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGTGT272400.09.6890262
GTGTTTG375450.08.8327383
TTGTGTT386350.08.6345771
CTTTGTG340200.08.0855711
TGTTTGA471950.07.8649951
TGTGTTT436900.07.68894862
GTTTGAG301750.06.9048292
GACGGGC33250.06.90171779
TTTGAGG147850.06.010713
ACGGGCG34850.05.87476710
TAACTTT210450.05.765191
AACTTTG230100.05.17283062
Produced by FastQC (version 0.11.2)