| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 2 | ANTT_12_01 | GCCAAT | N | lane2 | 751 | 100.00 | 14,719,237 | 15.70 | 97.85 | 2.15 | 98.17 | 37.89 | ||
| 2 | ANTT_12_02 | CAGATC | N | lane2 | 883 | 100.00 | 17,304,758 | 18.46 | 97.84 | 2.16 | 98.25 | 37.95 | ||
| 2 | ANUT_12_01 | TGACCA | N | lane2 | 1,059 | 100.00 | 20,764,883 | 22.16 | 98.83 | 1.17 | 98.35 | 38.01 | ||
| 2 | ANUT_12_02 | ACAGTG | N | lane2 | 665 | 100.00 | 13,037,831 | 13.91 | 98.90 | 1.10 | 98.44 | 38.05 | ||
| 2 | MC01 | GATCAG | N | lane2 | 648 | 100.00 | 12,701,672 | 13.55 | 98.40 | 1.60 | 98.09 | 37.88 | ||
| 2 | MC06 | TAGCTT | N | lane2 | 587 | 100.00 | 11,500,685 | 12.27 | 98.55 | 1.45 | 98.29 | 37.99 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 188 | 100.00 | 3,695,398 | 3.94 | 0.00 | 0.00 | 98.26 | 38.03 |
| 3 | ANCMTT_4_01 | GCCAAT | N | lane3 | 1,599 | 100.00 | 31,351,133 | 20.85 | 97.67 | 2.33 | 97.05 | 37.52 | ||
| 3 | ANCMTT_4_02 | CAGATC | N | lane3 | 1,183 | 100.00 | 23,203,070 | 15.43 | 97.08 | 2.92 | 97.11 | 37.56 | ||
| 3 | ANCMUT_4_01 | TGACCA | N | lane3 | 3,044 | 100.00 | 59,690,970 | 39.70 | 98.46 | 1.54 | 96.99 | 37.51 | ||
| 3 | ANCMUT_4_02 | ACAGTG | N | lane3 | 1,628 | 100.00 | 31,926,592 | 21.24 | 98.39 | 1.61 | 96.82 | 37.42 | ||
| 3 | lane3 | unknown | Undetermined | Clusters with unmatched barcodes for lane 3 | N | Undetermined_indices | 213 | 100.00 | 4,167,112 | 2.77 | 0.00 | 0.00 | 96.05 | 37.32 |
| 4 | MC02 | GATCAG | N | lane4 | 1,009 | 100.00 | 19,788,502 | 23.45 | 98.91 | 1.09 | 98.29 | 37.95 | ||
| 4 | MC03 | TAGCTT | N | lane4 | 1,214 | 100.00 | 23,806,981 | 28.21 | 98.93 | 1.07 | 98.20 | 37.88 | ||
| 4 | MC07 | GGCTAC | N | lane4 | 932 | 100.00 | 18,281,362 | 21.66 | 98.86 | 1.14 | 98.33 | 37.97 | ||
| 4 | MC08 | CTTGTA | N | lane4 | 973 | 100.00 | 19,084,481 | 22.62 | 97.92 | 2.08 | 98.33 | 37.97 | ||
| 4 | lane4 | unknown | Undetermined | Clusters with unmatched barcodes for lane 4 | N | Undetermined_indices | 175 | 100.00 | 3,424,268 | 4.06 | 0.00 | 0.00 | 98.38 | 38.06 |
| 5 | ANCMTT_24_01 | GCCAAT | N | lane5 | 342 | 100.00 | 6,706,500 | 7.73 | 98.14 | 1.86 | 98.46 | 38.03 | ||
| 5 | ANCMTT_24_02 | CAGATC | N | lane5 | 537 | 100.00 | 10,532,687 | 12.13 | 98.82 | 1.18 | 98.37 | 37.99 | ||
| 5 | ANCMUT_24_01 | TGACCA | N | lane5 | 416 | 100.00 | 8,147,988 | 9.39 | 98.67 | 1.33 | 98.48 | 38.04 | ||
| 5 | ANCMUT_24_02 | ACAGTG | N | lane5 | 888 | 100.00 | 17,419,440 | 20.07 | 98.96 | 1.04 | 98.48 | 38.06 | ||
| 5 | MC04 | GATCAG | N | lane5 | 555 | 100.00 | 10,881,715 | 12.54 | 98.75 | 1.25 | 98.41 | 38.02 | ||
| 5 | MC05 | TAGCTT | N | lane5 | 529 | 100.00 | 10,365,020 | 11.94 | 98.85 | 1.15 | 98.39 | 38.00 | ||
| 5 | MC09 | GGCTAC | N | lane5 | 483 | 100.00 | 9,472,510 | 10.91 | 98.61 | 1.39 | 98.48 | 38.06 | ||
| 5 | MC10 | CTTGTA | N | lane5 | 510 | 100.00 | 9,998,761 | 11.52 | 97.83 | 2.17 | 98.53 | 38.09 | ||
| 5 | lane5 | unknown | Undetermined | Clusters with unmatched barcodes for lane 5 | N | Undetermined_indices | 167 | 100.00 | 3,277,849 | 3.78 | 0.00 | 0.00 | 98.51 | 38.11 |
| 6 | handrdnfgfr15hpf1 | GGACCC | N | lane6 | 1,361 | 100.00 | 26,693,275 | 15.69 | 96.00 | 4.00 | 95.67 | 37.10 | ||
| 6 | handrdnfgfr15hpf2 | CCTCGG | N | lane6 | 1,530 | 100.00 | 29,995,282 | 17.63 | 98.02 | 1.98 | 96.09 | 37.27 | ||
| 6 | handrlaz15hpf1 | AAGGGA | N | lane6 | 1,155 | 100.00 | 22,653,397 | 13.32 | 96.62 | 3.38 | 95.99 | 37.20 | ||
| 6 | handrlaz15hpf2 | TTCAGC | N | lane6 | 1,234 | 100.00 | 24,197,825 | 14.23 | 98.56 | 1.44 | 95.59 | 37.09 | ||
| 6 | handrnoggin15hpf1 | CCTTCA | N | lane6 | 1,639 | 100.00 | 32,127,921 | 18.89 | 97.79 | 2.21 | 96.31 | 37.33 | ||
| 6 | handrnoggin15hpf2 | AAGACG | N | lane6 | 1,536 | 100.00 | 30,117,555 | 17.71 | 98.13 | 1.87 | 95.71 | 37.12 | ||
| 6 | lane6 | unknown | Undetermined | Clusters with unmatched barcodes for lane 6 | N | Undetermined_indices | 220 | 100.00 | 4,322,247 | 2.54 | 0.00 | 0.00 | 96.28 | 37.35 |
| 7 | SV26 | CGATGT | N | lane7 | 2,235 | 100.00 | 43,829,123 | 28.04 | 98.59 | 1.41 | 97.22 | 37.65 | ||
| 7 | SV27 | TGACCA | N | lane7 | 1,973 | 100.00 | 38,694,961 | 24.75 | 98.53 | 1.47 | 95.21 | 36.98 | ||
| 7 | SV28 | ACAGTG | N | lane7 | 1,102 | 100.00 | 21,604,389 | 13.82 | 98.56 | 1.44 | 96.87 | 37.54 | ||
| 7 | SV29 | GCCAAT | N | lane7 | 1,423 | 100.00 | 27,909,651 | 17.85 | 98.88 | 1.12 | 97.25 | 37.67 | ||
| 7 | SV30 | CAGATC | N | lane7 | 993 | 100.00 | 19,463,103 | 12.45 | 97.95 | 2.05 | 97.41 | 37.72 | ||
| 7 | lane7 | unknown | Undetermined | Clusters with unmatched barcodes for lane 7 | N | Undetermined_indices | 246 | 100.00 | 4,832,196 | 3.09 | 0.00 | 0.00 | 96.83 | 37.53 |
| 8 | SV45 | CAGATC | N | lane8 | 1,736 | 100.00 | 34,045,809 | 21.59 | 98.25 | 1.75 | 97.18 | 37.64 | ||
| 8 | SV46 | CGATGT | N | lane8 | 1,539 | 100.00 | 30,185,909 | 19.14 | 98.59 | 1.41 | 97.02 | 37.58 | ||
| 8 | SV47 | TGACCA | N | lane8 | 1,306 | 100.00 | 25,612,425 | 16.24 | 98.47 | 1.53 | 94.51 | 36.77 | ||
| 8 | SV48 | ACAGTG | N | lane8 | 1,558 | 100.00 | 30,544,144 | 19.37 | 98.69 | 1.31 | 96.61 | 37.45 | ||
| 8 | SV49 | GCCAAT | N | lane8 | 1,656 | 100.00 | 32,468,373 | 20.59 | 98.98 | 1.02 | 96.84 | 37.52 | ||
| 8 | lane8 | unknown | Undetermined | Clusters with unmatched barcodes for lane 8 | N | Undetermined_indices | 248 | 100.00 | 4,867,264 | 3.09 | 0.00 | 0.00 | 96.58 | 37.45 |
| SampleID | Recipe | Operator | Directory |
|---|
| ANTT_12_01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_ANTT_12_01 | ||
| ANTT_12_02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_ANTT_12_02 | ||
| ANUT_12_01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_ANUT_12_01 | ||
| ANUT_12_02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_ANUT_12_02 | ||
| MC01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_MC01 | ||
| MC06 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane2/Sample_MC06 | ||
| lane2 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 | ||
| ANCMTT_4_01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane3/Sample_ANCMTT_4_01 | ||
| ANCMTT_4_02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane3/Sample_ANCMTT_4_02 | ||
| ANCMUT_4_01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane3/Sample_ANCMUT_4_01 | ||
| ANCMUT_4_02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane3/Sample_ANCMUT_4_02 | ||
| lane3 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane3 | ||
| MC02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_MC02 | ||
| MC03 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_MC03 | ||
| MC07 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_MC07 | ||
| MC08 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane4/Sample_MC08 | ||
| lane4 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane4 | ||
| ANCMTT_24_01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_ANCMTT_24_01 | ||
| ANCMTT_24_02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_ANCMTT_24_02 | ||
| ANCMUT_24_01 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_ANCMUT_24_01 | ||
| ANCMUT_24_02 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_ANCMUT_24_02 | ||
| MC04 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_MC04 | ||
| MC05 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_MC05 | ||
| MC09 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_MC09 | ||
| MC10 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane5/Sample_MC10 | ||
| lane5 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane5 | ||
| handrdnfgfr15hpf1 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_handrdnfgfr15hpf1 | ||
| handrdnfgfr15hpf2 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_handrdnfgfr15hpf2 | ||
| handrlaz15hpf1 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_handrlaz15hpf1 | ||
| handrlaz15hpf2 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_handrlaz15hpf2 | ||
| handrnoggin15hpf1 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_handrnoggin15hpf1 | ||
| handrnoggin15hpf2 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane6/Sample_handrnoggin15hpf2 | ||
| lane6 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane6 | ||
| SV26 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_SV26 | ||
| SV27 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_SV27 | ||
| SV28 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_SV28 | ||
| SV29 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_SV29 | ||
| SV30 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane7/Sample_SV30 | ||
| lane7 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane7 | ||
| SV45 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_SV45 | ||
| SV46 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_SV46 | ||
| SV47 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_SV47 | ||
| SV48 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_SV48 | ||
| SV49 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Project_lane8/Sample_SV49 | ||
| lane8 | /export/data1/demux/C51F4ACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane8 |
bcl2fastq-1.8.4