MK190_GTTTCG_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK190_GTTTCG_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25822983
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGATCTCGTATGCC	2237083	8.663147088777466	TruSeq Adapter, Index 21 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	251190	43.888493	45
CACACGT	258555	43.746113	12
ACGTCTG	258100	43.7386	15
GTCTGAA	258955	43.588444	17
CGTCTGA	258955	43.560555	16
GCACACG	260465	43.494427	11
CGTATGC	254450	43.31558	44
CACGTCT	261115	43.25855	14
CTGAACT	261155	43.207718	19
TCTGAAC	261260	43.188625	18
CTCGTAT	256105	43.065464	42
TCGTATG	257250	42.983246	43
GTCACGT	256250	42.902447	29
CAGTCAC	262305	42.790188	27
ACACGTC	264465	42.765884	13
TCTCGTA	257950	42.754086	41
AGCACAC	266300	42.646152	10
CGTTTCG	253590	42.627907	33
ACGTTTC	254475	42.55843	32
CACGTTT	258085	42.540546	31