MK185_CCGTCC_L005_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK185_CCGTCC_L005_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14936437
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	126968	0.8500554717299715	TruSeq Adapter, Index 16 (97% over 40bp)
CTCCGGTTCCACTCCAGCGATTTCACGTTCTCTTGAACTCTCTCTTCAAAG	15562	0.10418816749938423	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCACCCG	22235	42.771393	30
GTCACCC	22395	42.687263	29
CACCCGT	22340	42.379017	31
CCGTCCC	21135	42.14428	34
ACCCGTC	22330	42.115593	32
CGTCCCG	21910	42.029552	35
AGTCACC	23295	41.589962	28
CCCGTCC	22090	41.116714	33
ACGTCTG	29115	40.38482	15
GTCCCGA	21715	40.324444	36
CGTCTGA	29520	39.579247	16
GTCTGAA	29610	39.527332	17
GCACACG	29775	39.065567	11
CAGTCAC	26255	39.000793	27
TCGTATG	25050	38.882233	45
CACACGT	29805	38.747726	12
CCCGATC	22410	38.277107	38
CTGAACT	30335	38.233402	19
CACGTCT	30595	38.070786	14
TCTGAAC	30505	37.917713	18