MK179_TAGCTT_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK179_TAGCTT_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12347302
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC	204902	1.6594880403832353	TruSeq Adapter, Index 10 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAGCTTA	23105	43.212868	34
ACTAGCT	23335	42.894207	32
TCACTAG	23915	42.36329	30
CACTAGC	23735	42.24767	31
CTAGCTT	23800	41.97124	33
CACACGT	25010	41.827362	12
GTATGCC	24420	41.77573	45
GTCACTA	24320	41.69668	29
ACGTCTG	25070	41.610767	15
AGTCACT	24670	41.325176	28
GCACACG	25425	41.259663	11
TATCTCG	24740	41.085915	39
CACGTCT	25500	40.97085	14
CGTCTGA	25635	40.64978	16
CTTATCT	24720	40.595997	37
AGCTTAT	24740	40.495743	35
CGTATGC	25410	40.17468	44
AGCACAC	26175	40.163383	10
CTCGTAT	25635	39.89231	42
ACACGTC	26290	39.842384	13