MK176_CAGATC_L004_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	MK176_CAGATC_L004_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11037771
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	329445	2.9847058794751224	TruSeq Adapter, Index 7 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACC	37330	43.533432	28
CACACGT	39020	43.0921	12
GCACACG	39220	42.923977	11
GTATGCC	38425	42.90718	45
CAGATCA	37385	42.75672	34
GTCACCA	37980	42.704876	29
TCACCAG	38045	42.500656	30
CGTATGC	38965	42.387646	44
ACGTCTG	39750	42.385426	15
CGTCTGA	39830	42.2777	16
CACGTCT	39855	42.234245	14
CTCGTAT	39195	42.098713	42
AGCACAC	40050	42.09621	10
ACCAGAT	38395	42.048393	32
GTCTGAA	40185	41.954975	17
CTGAACT	40255	41.887802	19
TCTGAAC	40490	41.633385	18
ACACGTC	40600	41.492504	13
TCGTATG	39890	41.478096	43
CAGTCAC	40040	41.357185	27