LW279_GCCAAT_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW279_GCCAAT_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9096189
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	281047	3.0897225200575757	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCACGC	32005	43.15673	29
GCACACG	33170	43.126217	11
ACGTCTG	32970	43.107563	15
ACACGTC	33160	43.017094	13
CACGTCT	33190	42.83491	14
CACACGT	33415	42.81675	12
TCACGCC	31980	42.816414	30
AGTCACG	32505	42.76424	28
CACGCCA	32020	42.71374	31
CGTCTGA	33305	42.63343	16
GTATGCC	32655	42.464096	45
CGTATGC	32815	42.270763	44
AGCACAC	33945	42.227768	10
ACTCCAG	33215	42.060806	23
CCAGTCA	33095	42.00256	26
CAGTCAC	33200	41.99848	27
GATCGGA	34145	41.906742	1
CTCGTAT	33000	41.84967	42
ACGCCAA	32695	41.78373	32
GAACTCC	33595	41.75295	21