LW277_TGACCA_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW277_TGACCA_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9510751
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC	470502	4.947054128533067	TruSeq Adapter, Index 4 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	56090	43.815014	11
ACACGTC	56030	43.745483	13
ACGTCTG	56125	43.682316	15
CACACGT	56250	43.658386	12
CACGTCT	56410	43.429714	14
CGTCTGA	56605	43.26023	16
AGCACAC	57020	43.21482	10
GATCGGA	57760	42.87132	1
GTATGCC	55180	42.82275	45
CAGTCAC	56340	42.81948	27
GAACTCC	56770	42.815956	21
ACTGACC	54655	42.778378	32
ACTCCAG	56575	42.717186	23
AGAGCAC	58075	42.712585	8
CACTGAC	55250	42.62717	31
GTCACTG	56630	42.598866	29
CCAGTCA	56645	42.561123	26
CTGACCA	54615	42.546062	33
TCCAGTC	56740	42.513653	25
TCGGAAG	58835	42.51222	3