LW272_GAGTGG_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW272_GAGTGG_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5042255
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATGCC	156317	3.100140710852585	TruSeq Adapter, Index 7 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	18655	43.06962	13
ACGTCTG	18705	42.880615	15
GCACACG	18840	42.73029	11
CACGTCT	18795	42.67528	14
CGAGTGG	17590	42.592937	33
ACGAGTG	17730	42.53578	32
CACACGT	18950	42.434757	12
AGTCACG	18475	42.405357	28
GTCACGA	18395	42.32027	29
CGTCTGA	18945	42.313637	16
CAGTCAC	18575	42.2134	27
GTATGCC	18175	42.136524	45
GGATCTC	18090	42.08979	38
CACGAGT	17950	42.077126	31
ACTCCAG	18835	41.881546	23
GAACTCC	18975	41.880833	21
TCACGAG	18625	41.784744	30
AGCACAC	19305	41.75932	10
GATCTCG	18295	41.741566	39
CGTATGC	18370	41.73824	44