LW265_CCGTCC_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW265_CCGTCC_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5130519
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	77639	1.513277701534679	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTCCC	9755	42.897945	34
CGTCCCG	9710	42.818707	35
CCCGTCC	9925	42.70721	33
GTCCCGA	9395	42.625942	36
GTCACCC	10155	42.40541	29
CACCCGT	10095	42.300034	31
ACCCGTC	10065	42.291996	32
TCACCCG	10245	42.11991	30
ACACGTC	10780	41.826035	13
AGTCACC	10385	41.684517	28
ACGTCTG	10820	41.545837	15
CACACGT	10855	41.53705	12
CCCGATC	9540	41.511257	38
CACGTCT	10900	41.343315	14
GCACACG	10905	41.325966	11
CGTCTGA	10975	40.979584	16
TCGTATG	9830	40.867233	45
CAGTCAC	10705	40.796165	27
TCCCGAT	9785	40.720867	37
CCAGTCA	10795	40.476883	26