LW260_TAGCTT_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW260_TAGCTT_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8335869
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC	199267	2.39047662577231	TruSeq Adapter, Index 10 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTCTGCC	10310	0.1236823659296949	TruSeq Adapter, Index 10 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACTAGC	30925	43.463055	31
ACTAGCT	31490	43.19766	32
GTATGCC	31060	43.15567	45
CGTATGC	31595	42.816677	44
ACGTCTG	35765	42.738735	15
TCACTAG	32290	42.73362	30
CTAGCTT	32755	42.717686	33
CAGTCAC	32500	42.68697	27
CCAGTCA	32260	42.661766	26
TAGCTTA	31395	42.603542	34
ACACGTC	35430	42.533226	13
CTCGTAT	32245	42.38528	42
TCGTATG	32850	42.371956	43
GCACACG	35515	42.342995	11
CACGTCT	35870	42.287468	14
GCTTATC	32265	42.263897	36
CACACGT	35605	42.26124	12
CGTCTGA	35295	42.205082	16
ACTCCAG	33680	42.18628	23
GAACTCC	33645	42.16998	21