LW259_GATCAG_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW259_GATCAG_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6657936
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC	207731	3.120051018814239	TruSeq Adapter, Index 9 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGCTCTCGTATGCC	10764	0.16167172529144166	TruSeq Adapter, Index 9 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTCTGCC	10436	0.15674527361032006	TruSeq Adapter, Index 9 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCAGATCTCGTATGCC	9089	0.13651377844425058	TruSeq Adapter, Index 9 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCCGATCTCGTATGCC	7379	0.1108301431554764	TruSeq Adapter, Index 9 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	33965	43.626125	45
GCACACG	39280	43.422314	11
ACGTCTG	39685	43.38704	15
ACACGTC	39215	43.333317	13
AGTCACG	36215	43.296844	28
CACACGT	39290	43.2452	12
GTCACGA	35200	43.12566	29
CACGTCT	39785	43.108334	14
CGTATGC	35005	43.01149	44
CGTCTGA	39085	42.97665	16
CCAGTCA	36130	42.887093	26
TCGTATG	36195	42.85242	43
CAGTCAC	36260	42.81528	27
ACTCCAG	37235	42.77451	23
CTCGTAT	35565	42.76926	42
CACGATC	34480	42.701565	31
GATCTCG	35880	42.692276	39
GAACTCC	37485	42.66265	21
AGCACAC	39345	42.56749	10
CGATCAG	34565	42.557495	33