LW257_CAGATC_L007_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW257_CAGATC_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6044641
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	441881	7.310293531079844	TruSeq Adapter, Index 7 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	50735	43.781105	45
AGTCACC	50500	43.432888	28
CTCGTAT	51240	43.358402	42
CGTATGC	51240	43.349617	44
TCGTATG	51465	43.26504	43
CAGTCAC	51565	43.165268	27
CCAGTCA	51500	43.097412	26
GTCACCA	50835	43.01546	29
ACTCCAG	51835	42.961777	23
ACCAGAT	50850	42.952682	32
ACGTCTG	52520	42.92772	15
TCTCGTA	51755	42.919407	41
TCCAGTC	51790	42.903522	25
CACACGT	52705	42.88055	12
ACACGTC	52700	42.87608	13
CACGTCT	52625	42.854538	14
CCAGATC	50410	42.85415	33
GCACACG	52775	42.8322	11
CGTCTGA	52650	42.796085	16
TCACCAG	51175	42.737053	30