LW252_GAGTGG_L006_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	LW252_GAGTGG_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4419034
Sequences flagged as poor quality	0
Sequence length	51
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTATGCC	151003	3.4171042811619006	TruSeq Adapter, Index 7 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGCTCTCGTATGCC	8719	0.19730556497189206	TruSeq Adapter, Index 7 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATCTCGTCTGCC	8501	0.19237236011309258	TruSeq Adapter, Index 7 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCGTGGATCTCGTATGCC	6755	0.15286146248252447	TruSeq Adapter, Index 16 (97% over 37bp)
GATCGGAAGAGCACACGTCTGCACTCCAGTCACGAGTGGATCTCGTATGCC	4679	0.10588286942349844	TruSeq Adapter, Index 9 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGAGTG	24975	43.151722	32
CACGAGT	24550	43.018936	31
CTCGTAT	25220	42.94694	42
AGTCACG	26355	42.883274	28
GAGTGGA	24660	42.73436	34
TCACGAG	25465	42.727818	30
TCGTATG	25955	42.701847	43
CGAGTGG	26050	42.675167	33
AGTGGAT	24625	42.63978	35
GTATGCC	24745	42.608707	45
TCTCGTA	25425	42.600185	41
CGTATGC	25130	42.475338	44
CTCCAGT	27840	42.405266	24
CCAGTCA	26345	42.403233	26
CACACGT	29375	42.339283	12
CAGTCAC	26405	42.333885	27
GGATCTC	25975	42.31136	38
TGGATCT	25690	42.278122	37
ACTCCAG	27650	42.232826	23
GTCACGA	25845	42.195347	29