FastQCFastQC Report
Fri 31 Oct 2014
AH8038C-141013_GCCAAT_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAH8038C-141013_GCCAAT_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14904615
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGGGG12450.022.95042416
CCTCGGG12850.022.5861915
GTCACGC18400.020.5429329
GGCGGTC15700.019.20498538
GATCGGA23800.019.0984971
TCGGGGA19400.018.55558417
GCACACG24300.018.51746711
CCCAGGC18150.016.98273334
CGTCTGA27650.016.51799216
AGTCACG23500.016.18085328
TCACGCC22950.016.17576830
ACGTCTG28600.016.04798515
CCAGGCG19000.015.74931535
CAGGCGG21050.015.49808636
CACGTCT30900.015.43601514
ACACGTC30150.015.22301613
GTCTCCC20200.015.15131342
GCGGTCT21050.015.07272839
CACACGT31000.014.66045812
CACGCCA26550.013.98244431
Produced by FastQC (version 0.11.2)