AH5187B-141013_GTGAAA_L003_R1_001.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	AH5187B-141013_GTGAAA_L003_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6300701
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG	221492	3.515354878766664	TruSeq Adapter, Index 19 (97% over 40bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	76700	1.2173248659157132	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	60391	0.9584806515973382	No Hit
TCTTCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	13030	0.20680238595673722	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	25330	43.93159	11
GATCGGA	25890	43.63062	1
CACACGT	25535	43.526375	12
ACACGTC	25505	43.515827	13
ACGTCTG	25540	43.420956	15
CACGTCT	25570	43.37881	14
AGTCACG	25415	43.34513	28
AGCACAC	25725	43.28293	10
GTCACGT	25360	43.276688	29
CGTCTGA	25665	43.183178	16
GAGCACA	25930	43.087555	9
TCACGTG	25485	43.072224	30
CACGTGA	25580	43.035397	31
TCGGAAG	26305	42.84142	3
AGAGCAC	26155	42.7427	8
CGATCTC	24955	42.68089	40
GATCTCG	25225	42.653618	41
ATCGGAA	26520	42.587418	2
CAGTCAC	25880	42.532562	27
TCGTATG	25750	42.527523	45