FastQCFastQC Report
Wed 23 Jul 2014
Undetermined_Undetermined_L007_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename Undetermined_Undetermined_L007_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 16634007
Filtered Sequences 0
Sequence length 51
%GC 44

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[WARN] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CACAC 1724525 2.5688126 6.6537223 12
GGAAG 1195440 1.9972239 6.3637576 5
TCCAG 1265860 1.9203355 5.8227687 25
CTGAA 1473190 1.8339688 5.265657 19
CTCCA 1208350 1.7642992 5.5675974 24
AGAGC 975865 1.5691942 5.5798383 8
GCACA 998105 1.5447251 5.7374263 11
GAGCA 909850 1.4630419 5.441786 9
GTCTG 888405 1.3725586 5.5074673 17
AGCAC 866240 1.3406432 5.5592866 10
ACTCC 750840 1.0962936 5.0482564 23
CGGAA 352645 0.56705433 5.1915083 4
Produced by FastQC (version 0.10.1)