FastQCFastQC Report
Wed 23 Jul 2014
SoilF_1_TGACCA_L005_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SoilF_1_TGACCA_L005_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 28589343
Filtered Sequences 0
Sequence length 51
%GC 38

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC 52566 0.18386571527719262 TruSeq Adapter, Index 4 (100% over 51bp)

[OK] Kmer Content

No overrepresented Kmers